Still not working.
It all about the bezel as without it everything is fine.
As soon as you click the screen the bezel goes behind the game.
Is there anything specific you have checked in Citra emulator or RL ?
Have no issues here with any of the two edited module versions shared regarding bezels, no matter if I click the screen using controller or mouse.
Regarding RL module options, I have fullscreen enabled. On Citra emulator for that view it needs to be "Large Screen" one in the screen layout options.
PS: You mentioned before that it was working with the exception of the that jump thing so now isn't working?
I only use this module and tested with Citra Nightly 2104. If you are using other version or Canary issues might happen.